Fall ushers in a season of warm spices, soft sweaters, and the irresistible pull of anything pumpkin. These Pumpkin Cream Cheese Muffins capture that cozy feeling in every bite, seamlessly marrying the earthy sweetness of pumpkin with a creamy, tangy center. Each muffin holds a swirl of velvety cream cheese filling, lending a luscious surprise as you sink your teeth into its tender crumb. With a blend of cinnamon, nutmeg, cloves, and ginger, these muffins evoke the essence of a crisp autumn morning and the simple joy of home baking. They’re moist, sweet, and just a tad spicy—everything you want from a fall treat.
Whether you’re a seasoned baker or just dipping your toes into muffin-making, this recipe is delightfully straightforward. In just under an hour—from prepping ingredients to cooling on the rack—you’ll have a dozen bakery-worthy muffins ready to share (or not!). Prep time is a breezy 15 minutes, baking takes about 20 minutes, and a quick 5-minute rest sets them up for the perfect texture. Each muffin clocks in at around 210 calories, making them a guilt-free breakfast treat or a cozy afternoon pick-me-up. Grab your mixing bowls and let’s dive into a recipe that’s bound to become a fall staple in your kitchen!
KEY INGREDIENTS IN PUMPKIN CREAM CHEESE MUFFINS
A delicious muffin starts with high-quality ingredients that each play a key role in texture, flavor, and balance. In this recipe, the components for the creamy center and the spiced pumpkin batter come together to create a harmony of sweet, tangy, and warmly spiced notes.
- Cream Cheese: Provides a rich, tangy filling that contrasts beautifully with the sweet pumpkin batter, adding moisture and a silky smooth texture.
- Granulated Sugar (Filling): Sweetens the cream cheese, ensuring the filling isn’t overpoweringly tangy and helping it attain a creamy consistency.
- Vanilla Extract (Filling): Enhances the flavor of the cream cheese, adding aromatic depth and rounding out the sweetness.
- All-Purpose Flour: Forms the structural backbone of the muffins, giving them a tender crumb while holding the filling in place.
- Granulated Sugar (Batter): Adds sweetness and helps the muffins brown beautifully for an inviting golden top.
- Brown Sugar: Brings a hint of molasses flavor and extra moisture, resulting in a softer, more flavorful crumb.
- Baking Soda: Acts as a leavening agent, ensuring the muffins rise properly and maintain a light, airy texture.
- Salt: Balances the sweetness and enhances the warm spices for a well-rounded flavor profile.
- Ground Cinnamon: Delivers classic warmth and sweetness that’s quintessential to any pumpkin-spiced treat.
- Ground Nutmeg: Adds a subtle nutty and slightly sweet-earthy note that complements the pumpkin.
- Ground Cloves: Imparts a deep, aromatic spice that gives the muffins a cozy, holiday-like character.
- Ground Ginger: Lends a gentle heat and zesty undertone, brightening the overall spice blend.
- Eggs: Provide structure, richness, and help emulsify the batter for a uniform texture.
- Pumpkin Puree: Brings natural moisture and that unmistakable pumpkin flavor, making these muffins perfectly moist and tender.
- Vegetable Oil: Keeps the muffins incredibly moist and tender; it also contributes to a soft crumb.
- Vanilla Extract (Batter): Adds a layer of aromatic sweetness that complements both pumpkin and spices.
HOW TO MAKE PUMPKIN CREAM CHEESE MUFFINS
Baking these muffins is about layering flavors and textures—starting with a spiced pumpkin batter and incorporating a creamy surprise center. Follow these steps carefully for muffins that boast tender crumbs and a luscious filling in every bite.
1. Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or spray it with cooking spray to ensure easy removal after baking.
2. In a medium bowl, mix the softened cream cheese, granulated sugar, and vanilla extract until smooth and creamy. Be sure to scrape down the sides of the bowl and set this luscious filling aside.
3. In a large mixing bowl, whisk together the all-purpose flour, granulated sugar, brown sugar, baking soda, salt, ground cinnamon, ground nutmeg, ground cloves, and ground ginger. This ensures the spices are evenly distributed throughout the batter.
4. In another bowl, combine the eggs, pumpkin puree, vegetable oil, and vanilla extract. Mix well until the mixture is uniform in color and texture.
5. Gradually stir the wet ingredients into the dry ingredients until just combined. Be careful not to overmix—a few streaks of flour are fine and will give you a tender muffin.
6. Fill each muffin cup about one-third full with the pumpkin batter, creating a base layer for the cream cheese filling.
7. Add a spoonful of the prepared cream cheese filling into the center of each muffin cup, gently pressing it into the batter.
8. Cover the cream cheese filling with the remaining pumpkin batter, filling each cup almost to the top.
9. Bake in the preheated oven for 18–22 minutes, or until a toothpick inserted into the center of the muffins (avoiding the filling) comes out clean.
10. Allow the muffins to cool in the pan for 5 minutes before transferring them to a wire rack to cool completely. This brief rest helps them set and prevents the filling from leaking out.
SERVING SUGGESTIONS FOR PUMPKIN CREAM CHEESE MUFFINS
Once these muffins are baked to golden perfection, the real fun begins—deciding how to enjoy them best! Whether you’re hosting a brunch, packing them for lunchboxes, or savoring a solo afternoon treat, these serving ideas will elevate every bite.
- Warm and Fresh: Serve the muffins straight from the oven when they’re still warm. The cream cheese center will be delightfully gooey, and the tops will glisten with a soft sheen.
- With a Cup of Coffee: Pair each spiced muffin with a rich, dark roast or a foamy latte. The coffee’s bold flavors accentuate the cinnamon and nutmeg in the batter.
- Drizzled with Honey: For extra sweetness, lightly drizzle honey or maple syrup over the cooled muffins. The sticky sweetness complements the tangy cream cheese and warm spices.
- Add a Streusel Topping: Before baking, sprinkle a buttery streusel made from flour, brown sugar, and cold butter over each muffin. The crumbly topping adds crunch and an extra layer of sweetness.
HOW TO STORE PUMPKIN CREAM CHEESE MUFFINS
Keeping these muffins fresh ensures you can enjoy their tender crumb and creamy filling days after they come out of the oven. Proper storage techniques will preserve both flavor and texture, making them just as enjoyable when you’re ready for a quick snack or breakfast later in the week.
- Room Temperature: Once completely cooled, store the muffins in an airtight container at room temperature for up to 2 days. Place a paper towel at the bottom to absorb any excess moisture.
- Refrigeration: For longer storage, keep the muffins in an airtight container in the refrigerator for up to 5 days. Chilling will firm up the cream cheese filling and intensify the spice flavors.
- Freezing: To enjoy muffins beyond a week, freeze them individually by wrapping each one in plastic wrap and placing them in a freezer-safe bag. They’ll keep for up to 2 months. Thaw at room temperature or warm in a 300°F oven for 10–12 minutes.
- Reheating Tips: For a fresh-from-the-oven taste, reheat refrigerated or thawed muffins in the microwave for 15–20 seconds or in a 325°F oven for 5–7 minutes. This revives the soft crumb and creamy center.
CONCLUSION
Recapping everything, these Pumpkin Cream Cheese Muffins deliver a perfect harmony of spiced pumpkin flavor and a luscious cream cheese surprise at the center. Easy enough for a beginner baker, this recipe takes just 15 minutes to prepare, 20 minutes to bake, and 5 minutes to cool, resulting in a dozen mouthwatering muffins. Each bite is moist, spiced with cinnamon, nutmeg, cloves, and ginger, and crowned by a velvety swirl of sweetened cream cheese. They make the ideal breakfast companion or an afternoon pick-me-up, offering just about 210 calories apiece and enough fall flavor to satisfy any craving. Feel free to print this article and save it in your recipe binder—you’ll want to come back to these moist, delicious treats season after season.
Below you’ll find a handy FAQ section to answer any extra questions you might have. If you try these muffins or need help at any step, I’d love to hear from you! Please leave your comments, questions, or feedback—I’m here to help you bake the most delightful Pumpkin Cream Cheese Muffins you’ve ever tasted. Happy baking!

Pumpkin Cream Cheese Muffins
Description
These Pumpkin Cream Cheese Muffins offer a delightful balance of spiced pumpkin flavor and rich cream cheese filling, perfect for cozy mornings or afternoon snacks.
Ingredients
Instructions
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Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners or spray with cooking spray.
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To prepare the cream cheese filling, mix the cream cheese, sugar, and vanilla extract in a medium bowl until smooth and creamy. Set aside.
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In a large mixing bowl, whisk together the flour, granulated sugar, brown sugar, baking soda, salt, cinnamon, nutmeg, cloves, and ginger.
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In another bowl, combine the eggs, pumpkin puree, vegetable oil, and vanilla extract. Mix well.
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Gradually stir the wet ingredients into the dry ingredients until just combined. Do not overmix.
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Fill each muffin cup about 1/3 of the way full with the pumpkin batter.
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Add a spoonful of the cream cheese filling to the center of each muffin cup.
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Cover the cream cheese filling with more pumpkin batter until each muffin cup is almost full.
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Bake in the preheated oven for 18-22 minutes, or until a toothpick inserted into the center of the muffins comes out clean.
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Allow the muffins to cool in the pan for 5 minutes before transferring them to a wire rack to cool completely.
Note
- These muffins are perfect for a fall breakfast or snack.
- Store the muffins in an airtight container in the refrigerator for up to 5 days.
- You can freeze these muffins for up to 2 months. Simply thaw at room temperature before serving.
- Add a streusel topping for extra texture and sweetness if desired.